Software Map
Project Tree
Now limiting view to projects in the following categories:
Topic :: Scientific/Engineering :: Bio-Informatics [Remove This Filter]
17 projects in result set.
MyCGR
- MyCGR is an Objective-Caml library and a collection of tools to make experiments using the Chaos Game Representation on DNA sequences (test of structure of sequences, taxonomy, ...).
|
- Development Status : 4 - Beta[Filter]
- Environment : Console \(Text Based\)[Filter]
- Environment : X11 Applications[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Objective-Caml[Filter]
- Research center : Rocquencourt[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
- Topic : Scientific/Engineering : Mathematics[Filter]
|
Activity Percentile: 11.99
Registered: 2006-03-13 08:48 |
BLiFF++
- The BLiFF++ library: a BCI Library For Free in C++
This library aims at providing classes that could used to quickly design, test and assess (mainly off line) Brain-Computer Interfaces (BCI) in C++. It is a free and open-source library.
|
- Development Status : 3 - Alpha[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Kind : Software[Filter]
- License : OSI Approved : GNU General Public License \(GPL\)[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : C\+\+[Filter]
- Research center : Rennes[Filter]
- Topic : Scientific/Engineering : Artificial Intelligence[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
- Topic : Scientific/Engineering : Human Machine Interfaces[Filter]
|
Activity Percentile: 8.56
Registered: 2008-06-26 14:22 |
Coala
- Coala : "CO-evolution Assessment by a Likelihood-free Approach"
Coala is a method for estimating the frequency of the events for co-evolutionary studies via an approximative Bayesian computation.
|
- Development Status : 4 - Beta[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Publication\(s\)[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : MacOS[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Java[Filter]
- Research center : Montbonnot[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 7.71
Registered: 2013-10-10 12:10 |
LogolExec
- LogolExec is a Logol grammar interpreter. It matches a grammar written in LOGOL language againts one or several dna/protein sequence. It also offers a result analyser interface and a graphical grammar creation tool.
!WARNING!: code is now hosted on github at https://github.com/genouest/logol
|
- Development Status : 5 - Production/Stable[Filter]
- Environment : Console \(Text Based\)[Filter]
- Environment : Web Environment[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Java[Filter]
- Programming Language : Prolog[Filter]
- Research center : Rennes[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 7.02
Registered: 2008-05-23 12:03 |
Gobbolino & Touché
- Gobbolino is a software tool for the enumeration of metabolic stories (maximal DAGs with a constrained set of sources/targets). A new algorithm, called Touché, is also available both in the SCM and at the Doc Manager (unique zip).
|
- Development Status : 4 - Beta[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : Public Domain[Filter]
- Natural Language : English[Filter]
- Programming Language : Java[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Registered: 2011-12-13 16:57 |
Eucalypt
- Eucalypt: Efficient tree reconciliation enumerator
|
- Development Status : 4 - Beta[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Publication\(s\)[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : OS Independent[Filter]
- Programming Language : Java[Filter]
- Research center : Montbonnot[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.86
Registered: 2013-10-28 10:33 |
ASCQ-ME
- ASCQ-ME est un nouvel outil pour faire de l'identification de protéines par PMF. Un de ses principaux atouts est l'utilisation directe de spectres MS bruts sans extraction des pics mono isotopiques.
|
- Development Status : 5 - Production/Stable[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : Microsoft : Windows : Windows NT/2000[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : C\+\+[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2006-01-17 09:52 |
Plate-forme de bioinformatique Genouest
- Plate forme de bio-informatique d'OUEST-genopole(R).
|
- Development Status : 5 - Production/Stable[Filter]
- Environment : Console \(Text Based\)[Filter]
- Environment : Web Environment[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Work group[Filter]
- License : Other/Proprietary License[Filter]
- Natural Language : English[Filter]
- Natural Language : French[Filter]
- Operating System : OS Independent[Filter]
- Programming Language : JavaScript[Filter]
- Programming Language : PHP[Filter]
- Programming Language : Python[Filter]
- Research center : Rennes[Filter]
- Topic : Database : Database Engines/Servers[Filter]
- Topic : Internet : WWW/HTTP : Dynamic Content : CGI Tools/Libraries[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2005-08-01 11:19 |
SPADE: small particle detection
- Warning! Project has been moved to https://gitlab.inria.fr/ncedilni/spade
|
- Development Status : 3 - Alpha[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Python[Filter]
- Research center : Sophia Antipolis[Filter]
- Topic : Multimedia : Graphics[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Registered: 2016-05-12 16:35 |
Auxin Transport with Apoplastic Chamber
- This project aims to simulate auxin transport, both active and passive, within a plant, as an aid to understanding morphogenesis.
|
- Development Status : 2 - Pre-Alpha[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : CeCILL-C[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Python[Filter]
- Research center : Sophia Antipolis[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2009-07-23 14:05 |
Vimagine-code
- Vimagine-code is devoted to provide the code sharing infrastructure for the VIMAGINE ANR blanc project (2009-2012) that is, fMRI and MEG data analysis tools for different visual system investigation.
|
- Development Status : 1 - Planning[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Kind : Work group[Filter]
- License : OSI Approved : BSD License[Filter]
- Natural Language : English[Filter]
- Natural Language : French[Filter]
- Operating System : OS Independent[Filter]
- Programming Language : C\+\+[Filter]
- Programming Language : Python[Filter]
- Research center : Saclay - Ile de France[Filter]
- Research center : Sophia Antipolis[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
- Topic : Scientific/Engineering : Medical Science Apps\.[Filter]
|
Activity Percentile: 0.00
Registered: 2010-07-13 16:05 |
FIBRESO
- Prédiction de la spécificité tissulaire des gènes à partir de leur séquences régulatrice.
|
- Development Status : 1 - Planning[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : C\+\+[Filter]
- Programming Language : Java[Filter]
- Programming Language : Objective-Caml[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2006-11-13 14:17 |
cocluster: co-clustering C++ library
- Simultaneous clustering of rows and columns, usually designated by
biclustering, co-clustering or block clustering, is an important technique
in two way data analysis. It consists of estimating a mixture model which
takes into account the block clustering problem on both the individual and
variables sets.
|
- Development Status : 1 - Planning[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : OSI Approved : GNU General Public License \(GPL\)[Filter]
- Natural Language : French[Filter]
- Operating System : Microsoft : Windows[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : C\+\+[Filter]
- Research center : Lille - Nord Europe[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
- Topic : Scientific/Engineering : Data Mining[Filter]
- Topic : Scientific/Engineering : Mathematics[Filter]
|
Activity Percentile: 0.00
Registered: 2011-11-09 10:11 |
SToRM
- SToRM is a software tool primarily proposed for mapping Illumina or SOLiD reads to a reference genome. SToRM uses spaced seeds and SIMD bandwidth alignment (SSE,SSE2,AVX2,AVX512).
|
- Development Status : 4 - Beta[Filter]
- Environment : Console \(Text Based\)[Filter]
- Environment : OpenMP[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Intended Audience : Other Audience[Filter]
- Kind : Software[Filter]
- Natural Language : English[Filter]
- Natural Language : French[Filter]
- Operating System : MacOS[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Assembly[Filter]
- Programming Language : C[Filter]
- Research center : Lille - Nord Europe[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Registered: 2013-10-02 07:50 |
biomanycores
- biomanycores is a repository of open-source parallel bioinformatics code in CUDA and OpenCL. The aim of the project is to bridge the gap between researches in high-performance-computing and usual bioinformaticians and biologists.
|
- Development Status : 5 - Production/Stable[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : OSI Approved[Filter]
- Natural Language : English[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : Java[Filter]
- Programming Language : Perl[Filter]
- Programming Language : Python[Filter]
- Research center : Lille - Nord Europe[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2009-07-07 11:51 |
Semantic Distillation
- Novel method of fuzzy hierarchical clustering or "semantic distillation", inspired from the theory of quantum measurement, to analyze and retrieve information from high throughput biological data.
|
- Development Status : 1 - Planning[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Kind : Software[Filter]
- License : OSI Approved : GNU General Public License \(GPL\)[Filter]
- Natural Language : English[Filter]
- Operating System : MacOS[Filter]
- Operating System : Microsoft[Filter]
- Operating System : POSIX : GNU/Linux[Filter]
- Programming Language : C[Filter]
- Programming Language : Fortran[Filter]
- Research center : Rennes[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2008-07-18 09:52 |
AnaesthesiaSimulator
- The tool simulates the activity of networks of spiking neurons subjected to specific receptor dynamics. The tools is a platform to test effects of anaesthetics on neural activity. The activity will be visualized in a 2D and 3D-plot evolving in time.
|
- Development Status : 2 - Pre-Alpha[Filter]
- Environment : Console \(Text Based\)[Filter]
- Intended Audience : Developers[Filter]
- Intended Audience : End Users/Desktop[Filter]
- Kind : Software[Filter]
- License : CeCILL[Filter]
- Natural Language : English[Filter]
- Programming Language : Python[Filter]
- Research center : Nancy[Filter]
- Topic : Scientific/Engineering : Bio-Informatics (Now Filtering)
- Topic : Scientific/Engineering : Medical Science Apps\.[Filter]
- Topic : Scientific/Engineering : Visualization[Filter]
|
Activity Percentile: 0.00
Registered: 2013-02-13 09:04 |
