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File Release Notes and Changelog

Release Name: 2.0.0

Change Log

2.0.0 Multi-threaded GkArrays construction (preliminary version due to A. Limasset) Improved construction algorithm which does not rely anymore on SA construction (preliminary version due to A. Limasset) Manage paired-end reads (thanks to J. Audoux) Manage stranded (or non-stranded) libraries. In a non stranded library, ATTG, and its reverse complement CAAT are considered equivalent (preliminary version due to A. Limasset) Can build GkArrays using bit vectors instead of integer arrays. It therefore guarantees to use less memory, at the expense of a longer construction and query time (preliminary version from F. Recourt, final version by A. Mancheron)