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File Release Notes and Changelog

Release Name: alignapi-4.8

Release Notes
Version 4.8 (2097): 2015-11-20 - Ant├ęsine

The Alignment API is now compiled in Java 1.8 (please provide feedback if you need it for 1.7).

- Fixed a bug in pool aggregation (impl)
- Fixed a bug in EDOALCell.inverse() (edoal)
- Improved error reporting (err500) when ontology is unknown (serv)
- BasicCell throws an exception when confidence is out of bounds (impl)
- Implemented AbstractRepairer (impl)
- Implemented database store for EDOAL (serv)
- Implemented join/meet/diff/close for BasicOntologyNetwork (impl)
- Added interface AlignmentRepairer (api)
- Added CSV renderer (impl)
- Added SPARQLLinkkerRendererVisitor generating SPARQL from link keys (impl)
- Added alignment #version standard extension (format)
- Added banner option to server (server)
- Added BasicConfidence class (impl)
- Added Aggregate transformation to EDOAL (edoal)
- Added guards in BasicCell join and meet (impl)
- Added normalisation to BasicAlignment algebraic operators + revised join (impl)
- Introduced and fully implemented DisjunctiveRelation and AlgebraRelation allowing for using algebras of relations in alignments (impl)
- Generalised the use of IndentedRendererVisitor in renderers (impl)
- Used intermediate RelationTransformer in renderers (impl)
- Added tutorial6 about data interlinking (tutorial)
- Introduced V5 marker for documenting anticipated API evolution (api)
- Upgraded to SLF4J 1.7.12 (lib)
- Upgraded to gson 2.4 (lib)
- Upgraded to lang3 3.4 (lib)
- Upgraded to lucene 5.3.1 (lib)
- Upgraded to commons cli 1.3.1 (lib)
- Upgraded to Jena 3.0.0 (lib)
- Upgraded to Jade 4.3.3 (lib)
- Upgraded to mysql 5.1.36 and postgres 9.4-1204 (lib)
- Upgraded to Jetty 9.3.3 (lib)
Change Log
Buildfile: /Java/alignapi-releases/align-4.8/build.xml

bind:

versionnumber:

release:
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zip:
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clean:
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cleantest:
     [echo] Cleaning tests...

clean:
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init:

clean:

clean:
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versionnumber:

compileall:
     [echo] Erasing...

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cleanjar:
     [echo] Erasing...
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/align.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/ontowrap.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/alignsvc.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/procalign.jar

bind:

compile:
     [echo] Compiling...
    [javac] Compiling 276 source files to /Java/alignapi-releases/align-4.8/classes

versionnumber:

jar:
     [echo] Jarchiving...
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/align.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/ontowrap.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/procalign.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/alignsvc.jar

init:

compileall:
     [echo] Erasing...
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/neon/neonalign

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compile:
     [echo] Compiling...
    [javac] Compiling 9 source files to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign

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compileall:
     [echo] Erasing...
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/webcontent/webc
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/webcontent/webc/WEB-INF
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/webcontent/webc/WEB-INF/classes

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compile:
     [echo] Compiling...
    [javac] Compiling 2 source files to /Java/alignapi-releases/align-4.8/plugins/webcontent/webc/WEB-INF/classes

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compileall:
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compile:
     [echo] Compiling...
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/android/classes
    [javac] Compiling 123 source files to /Java/alignapi-releases/align-4.8/plugins/android/classes

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compile:
     [echo] Compiling...

versionnumber:

jar:
     [echo] Jarchiving...
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/align.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/align.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/ontowrap.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/ontowrap.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/procalign.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/procalign.jar
   [delete] Deleting: /Java/alignapi-releases/align-4.8/lib/alignsvc.jar
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/lib/alignsvc.jar

bind:

test:
     [echo] Testing...
     [echo] You may also want to try sh test/clitest.sh
    [javac] Compiling 15 source files to /Java/alignapi-releases/align-4.8/test/classes
   [testng] SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
   [testng] SLF4J: Defaulting to no-operation (NOP) logger implementation
   [testng] SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
   [testng] [TestNG] Running:
   [testng]   Ant suite
   [testng] 
   [testng] 
   [testng] ===============================================
   [testng] Ant suite
   [testng] Total tests run: 151, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

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cleantest:
     [echo] Cleaning tests...

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javadoc:
     [echo] Javadocing... 4.8
  [javadoc] Generating Javadoc
  [javadoc] Javadoc execution
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.cli...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.gen...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.gen.alt...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl.aggr...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl.edoal...
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  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl.method...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl.rel...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.impl.renderer...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.ling...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.parser...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.service...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.service.jade...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.service.jade.messageontology...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.service.msg...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.service.osgi...
  [javadoc] Loading source files for package fr.inrialpes.exmo.align.util...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.jena25...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.owlapi10...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.owlapi30...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.skosapi...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.skoslite...
  [javadoc] Loading source files for package fr.inrialpes.exmo.ontowrap.util...
  [javadoc] Loading source files for package fr.inrialpes.exmo.queryprocessor...
  [javadoc] Loading source files for package org.semanticweb.owl.align...
  [javadoc] Constructing Javadoc information...
  [javadoc] Creating destination directory: "/Java/alignapi-releases/align-4.8/javadoc/"
  [javadoc] Standard Doclet version 1.8.0_40
  [javadoc] Building tree for all the packages and classes...


****** Many Javadoc errors here


  [javadoc] Building index for all the packages and classes...
  [javadoc] Building index for all classes...
  [javadoc] Generating /Java/alignapi-releases/align-4.8/javadoc/help-doc.html...
  [javadoc] 59 errors
  [javadoc] 100 warnings

init:

compileall:
     [echo] Erasing...
   [delete] Deleting directory /Java/alignapi-releases/align-4.8/plugins/neon/neonalign
    [mkdir] Created dir: /Java/alignapi-releases/align-4.8/plugins/neon/neonalign

init:

compile:
     [echo] Compiling...
    [javac] Compiling 9 source files to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign

jar:
     [echo] Jarchiving...
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign
     [copy] Copying 1 file to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign
     [copy] Copying 2 files to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign/icons
     [copy] Copying 10 files to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign/html
     [copy] Copying 4 files to /Java/alignapi-releases/align-4.8/plugins/neon/neonalign/lib
      [jar] Building jar: /Java/alignapi-releases/align-4.8/plugins/neon/fr.inrialpes.exmo.align.plugin.neontk_2.3.9.jar

clean:
     [echo] Cleaning...
   [delete] Deleting directory /Java/alignapi-releases/align-4.8/plugins/neon/neonalign

init:

compileall:
     [echo] Erasing...

init:

compile:
     [echo] Compiling...
    [javac] Compiling 123 source files to /Java/alignapi-releases/align-4.8/plugins/android/classes

jar:
     [echo] Jarchiving...
      [jar] Building jar: /Java/alignapi-releases/align-4.8/plugins/android/lib/microalign.jar
   [delete] Deleting directory /Java/alignapi-releases/align-4.8/plugins/android/classes
      [zip] Building zip: /tmp/align-4.8.zip
     [echo] Please upload the released file to Gforge
     [echo] mv /tmp/align-4.8.zip ${FTPDir}/
     [echo] svn copy svn+ssh://euzenat@scm.gforge.inria.fr/svn/alignapi/trunk svn+ssh://euzenat@scm.gforge.inria.fr/svn/alignapi/tags/version-4.8 -m 'release 4.8'
   [delete] Deleting: /Java/alignapi-releases/align-4.8/LICENSE.TXT

BUILD SUCCESSFUL
Total time: 16 seconds